FragHMMent - Papers

If you use this method in your work, please cite:

• Patrik Björkholm, Fredrik Lysholm, Andriy Kryshtafovych, Bengt Persson, Krzysztof Fidelis, and Torgeir R. Hvidsten. FragHMMent: Online local protein structure prediction server. Submitted
• P. Björkholm, P. Daniluk, A. Kryshtafovych, K. Fidelis, R. Andersson and T. R. Hvidsten. Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts. Bioinformatics 25: 1264-1270, 2009.

For more information about local descriptors, see:

• T. R. Hvidsten, A. Kryshtafovych and K. Fidelis. Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions, Proteins: Structure, Function, and Bioinformatics 75 (4): 870-884, 2009.
• More papers on local descriptors